Rhizobium
Rhizobium | ||||||||||||
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Rhizobium tropici á agar.
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Vísindaleg flokkun | ||||||||||||
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Einkennistegund | ||||||||||||
Rhizobium leguminosarum | ||||||||||||
Species[1] | ||||||||||||
Rhizobium er ættkvísl Gram-neikvæðra jarðvegs baktería sem binda nítrógen. Rhizobium mynda innanfrumusamlíf í sambandi við rætur ertuættar og Parasponia.
Bakteríurnar búa í plöntufrumum í rótarhnýðum þar sem þau umbreyta nitri í lofti í ammoníak og gefa af sér nitursambönd svo sem glútamín eða ureide til plöntunnar. Á móti veitir plantan bakteríunum lífræn efni sem hún hefur myndað með ljóstillífun..[2] Þetta er gagnkvæmt hagkvæmt samlífi sem er einkennandi fyrir Rhizobium ættkvíslina.
Saga
[breyta | breyta frumkóða]Beijerinck í Niðurlöndum var fyrstur til að einangra og rækta örveru úr rótum ertuplantna 1888. Hann nefndi hana Bacillus radicicola, og er hún nú staðsett í Bergey's Manual of Determinative Bacteriology undir ættkvíslinni Rhizobium.
Tegundir
[breyta | breyta frumkóða]- Rhizobium aggregatum (Hirsch and Müller 1986) Kaur et al. 2011[3]
- Rhizobium alamii Berge et al. 2009
- Rhizobium alvei Sheu et al. 2015
- Rhizobium anhuiense Zhang et al. 2015
- Rhizobium azibense Mnasri et al. 2014
- Rhizobium azooxidifex Behrendt et al. 2016
- Rhizobium bangladeshense Harun-or Rashid et al. 2015
- Rhizobium binae Harun-or Rashid et al. 2015
- Rhizobium calliandrae Rincón-Rosales et al. 2013
- Rhizobium capsici Lin et al. 2015
- Rhizobium cauense Liu et al. 2015
- Rhizobium cellulosilyticum García-Fraile et al. 2007
- Rhizobium daejeonense Quan et al. 2005
- Rhizobium ecuadorense Ribeiro et al. 2015
- Rhizobium endolithicum Parag et al. 2014
- Rhizobium endophyticum López-López et al. 2010
- Rhizobium etli Segovia et al. 1993[4]
- symbiovar mimosae
- symbiovar phaseoli
- Rhizobium fabae Tian et al. 2008
- Rhizobium flavum Gu et al. 2014
- Rhizobium freirei Dall'Agnol et all. 2013
- Rhizobium gallicum Amarger et al. 1997
- Rhizobium grahamii López-López et al. 2011
- Rhizobium hainanense Chen et al. 1997
- Rhizobium halophytocola Bibi et al. 2012
- Rhizobium halotolerans Diange and Lee 2013[7]
- Rhizobium indigoferae Wei et al. 2002
- Rhizobium jaguaris Rincón-Rosales et al. 2013
- Rhizobium kunmingense Shen et al. 2010
- Rhizobium laguerreae Saïdi et al. 2014
- Rhizobium leguminosarum (Frank 1879) Frank 1889
- symbiovar trifolii
- symbiovar viciae
- Rhizobium lemnae Kittiwongwattana & Thawai 2014
- Rhizobium lentis Harun-or Rashid et al. 2015
- Rhizobium leucaenae Ribeiro et al. 2011
- Rhizobium loessense Wei et al. 2003
- Rhizobium lusitanum Valverde et al. 2006
- "Candidatus Rhizobium massiliae" Greub et al. 2004.
- Rhizobium mayense Rincón-Rosales et al. 2013
- Rhizobium mesoamericanum López-López et al. 2011
- Rhizobium mesosinicum Lin et al. 2009
- Rhizobium metallidurans Grison et al. 2015
- Rhizobium miluonense Gu et al. 2008
- Rhizobium mongolense Van Berkum et al. 1998[6]
- Rhizobium multihospitium Han et al. 2008
- Rhizobium naphthalenivorans Kaiya et al. 2012
- Rhizobium oryzicola Zhang et al. 2015
- Rhizobium pakistanensis Khalid et al. 2014
- Rhizobium paranaense Dall'Agnol et al. 2014
- Rhizobium petrolearium Zhang et al. 2012
- Rhizobium phaseoli Dangeard 1926 emend. Ramírez-Bahena et al. 2008
- Rhizobium phenanthrenilyticum Wen et al. 2011
- Rhizobium pisi Ramírez-Bahena et al. 2008
- Rhizobium pongamiae Kesari et al. 2013[9]
- Rhizobium populi Rozahon et al. 2014
- Rhizobium qilianshanense Xu et al. 2013[10]
- Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001
- Rhizobium rhizoryzae Zhang et al. 2014
- Rhizobium rosettiformans Kaur et al. 2011
- Rhizobium selenitireducens corrig. Hunter et al. 2008
- Rhizobium smilacinae Zhang et al. 2014
- Rhizobium soli Yoon et al. 2010
- Rhizobium sophorae Jiao et al. 2014
- Rhizobium sophoriradicis Jiao et al. 2014
- Rhizobium straminoryzae Lin et al. 2014
- Rhizobium subbaraonis Ramana et al. 2013
- Rhizobium sullae Squartini et al. 2002
- Rhizobium tarimense Turdahon et al. 2012[11]
- Rhizobium tibeticum Hou et al. 2009
- Rhizobium tropici Martínez-Romero et al. 1991
- Rhizobium tubonense Zhang et al. 2011
- Rhizobium vallis Wang et all. 2011[12]
- Rhizobium yanglingense Tan et al. 2001[6]
- Rhizobium yantingense Chen et al. 2015
Phylogeny
[breyta | breyta frumkóða]Núverandi viðurkennt ættartré samkvæmt List of Prokaryotic names with Standing in Nomenclature [1] og National Center for Biotechnology Information (NCBI)[13] og ættartréð er byggt á 16S rRNA-based LTP release 106 frá The All-Species Living Tree Project [14]
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Tilvísanir
[breyta | breyta frumkóða]- ↑ 1,0 1,1 J.P. Euzéby. „Rhizobium“. List of Prokaryotic names with Standing in Nomenclature (LPSN). Afrit af upprunalegu geymt þann 23. maí 2012. Sótt 2. maí 2012.
- ↑ Sawada H, Kuykendall LD, Young JM (2003). „Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts“. J. Gen. Appl. Microbiol. 49 (3): 155–79. doi:10.1099/ijs.0.026484-0. PMID 21131504.
- ↑ NOTE: This strain was formerly named Blastobacter aggregatus.
- ↑ NOTE: This species was formerly known as R. leguminosarum sv. phaseoli.
- ↑ 5,0 5,1 Amarger N, Macheret V, Laguerre G. (1997). „Rhizobium gallicum sp. nov. and Rhizobium giardinii sp. nov., from Phaseolus vulgaris nodules“. Int. J. Syst. Bacteriol. 47 (4): 996–1006. doi:10.1099/00207713-47-4-996. PMID 9336898.
- ↑ 6,0 6,1 6,2 NOTE: R. gallicum and R. mongolense are 99.2% identical in their rDNA and may be the same species. It has been proposed by Silva et al. that R. mongolense and R. yanglingense be reclassified as R. gallicum sv. orientale.
- ↑ Diange, E. A.; Lee, S. S. (2013). „Rhizobium halotolerans sp. nov., Isolated from Chloroethylenes Contaminated Soil“. Current Microbiology. 66 (6): 599–605. doi:10.1007/s00284-013-0313-x. PMID 23377488.
- ↑ 8,0 8,1 Marek-Kozaczuk M, Leszcz A, Wielbo J, Wdowiak-Wróbel S, Skorupska A. (2013). „Rhizobium pisi sv. trifolii K3.22 harboring nod genes of the Rhizobium leguminosarum sv. trifolii cluster“. Syst. Appl. Microbiol. 36 (4): 252–8. doi:10.1016/j.syapm.2013.01.005. PMID 23507586.
- ↑ Kesari, V.; Ramesh, A. M.; Rangan, L. (2013). „Rhizobium pongamiae sp. nov. From Root Nodules of Pongamia pinnata“. BioMed Research International. 2013: 1–9. doi:10.1155/2013/165198.
- ↑ Xu, Lin; Zhang, Yong; Deng, Zheng Shan; Zhao, Liang; Wei, Xiu Li; Wei, Ge Hong (2013). „Rhizobium qilianshanense sp. nov., a novel species isolated from root nodule of *Oxytropis ochrocephala Bunge in China“. Antonie van Leeuwenhoek. 103 (3): 559–565. doi:10.1007/s10482-012-9840-x.
- ↑ Turdahon M, Osman G, Hamdun M, Yusuf K, Abdurehim Z, Abaydulla G, Abdukerim M, Fang C, Rahman E (2012). „Rhizobium tarimense sp. nov. isolated from soil in the ancient Khiyik river of Xinjiang, China“. Int. J. Syst. Evol. Microbiol. 63 (Pt 7): 2424–9. doi:10.1099/ijs.0.042176-0. PMID 23203621.
- ↑ Fang Wang, En Tao Wang, Li Juan Wu, Xin Hua Sui, Ying Li Jr., and Wen Xin Chen (2011). „Rhizobium vallis sp. nov., isolated from nodules of three leguminous species“. Int. J. Gen. Syst. Evol. Microbiol. 61 (11): 2582–2588. doi:10.2323/jgam.49.155. PMID 12949698.
- ↑ Sayers; og fleiri. „Rhizobium/Agrobacterium group“. National Center for Biotechnology Information (NCBI) taxonomy database. Sótt 2. maí 2012.
- ↑ All-Species Living Tree Project.„16S rRNA-based LTP release 106 (full tree)“ (PDF). Silva Comprehensive Ribosomal RNA Database. Afrit af upprunalegu (PDF) geymt þann 7. maí 2012. Sótt 2. maí 2012.
- ↑ This is the type species for the genus.
- ↑ Arthrobacter viscosus is currently classified in the Micrococcaceae. See Arthrobacter.